I got the headstock broken down this morning. The original spindle is in really rough shape and had really been hammered on by a previous owner. The rear take-up nut had been hammered and hit installed/removed with a punch more than once. I'll be making a new nut before I install the replacement spindle. The nut on my Atlas has a set screw and a brass plate to bear on the spindle threads. I'm not sure if the original nut on the Logan had a similar set screw or not. If it did, the threads were too mangled from people using punches on it to tell.
I have not removed the smaller rear bearing, but I've found replacements from $10-20. Other than a known manufacturer, is there anything special to be looking for here? It looks like the original bearing is from New Departure? I'm going to try to clean and relube the front bearing.