I really see only two reasons for investing the time in making jigs:
1) the work is extremely precise and there is no other way to align for the next operation, or
2) I am going to bang out at least a hundred of the part and I need a way to index them quickly
Otherwise you run into what you see, more time spent setting up than getting work done.
However, you likely learned a lot about fixturing that can be applied in the future, and now you should be able to bang them out quickly.
-brino