We have the same mill. When it just sat on the bench fastened to a 1 1/2 of wood for a stable base I trammed it and shimmed it to correct. Then we got heavy benches from the plant my son was working at and I put 3/4" plywood on top of them to dress them up a bit. We moved the mill to this bench and I fastened it down to the top of the bench. I have bolts that go completely through the top. When I went to re-tram the mill it had changed from old bench to the other. I found that depending on the tightness of each bolt holding the base to the bench it twisted the base causing the squareness to change. My suggestion would be if you fasten it down do so than tram.
So far the mill has performed flawlessly since we got it. We did install the air spring kit because the spring support that is on it does not do a good job. Also we built a power feed for it which is great for larger parts and smoother milling finish. The other thing is adding DROs to it which you should be able to do for about $120 for all three axis.
I found binding on the tables at certain locations and needed to lap the dovetail joint and jib which greatly improved the movement in the x and y.
The fine adjustment on the Z can be made smoother, easier to turn by aligning the linkage that comes out to the knob. I added another block on that linkage to keep the linkage in alignment because when you try to fine adjust the linkage tends to want to move out of alignment causing more friction in the rotation.
I have more little tweaks I did but I'll have to think about it.
Did you get a rotary table, 3" chuck for the rotary table and dividing plate for it? You may want to invest in this also.
Let us know how yours works out.
Have a great day!
Ed