Two things from looking at the picture... Is the one on the right a broken dowel or tap? Hard to tell from the picture, but it's got that "broken tap" look to it.
Also, are there set screws on the sides of the hub holding in the dowels?
A third question would be what purpose do these dowels serve? I doubt that it is to locate a part and it appears that maybe someone else has drilled additional holes in the past... do these dowel "drive" a part? If we understood what purpose they serve we may actually suggest you drill new holes???
Ted