As for the box and packing, who cares, your throwing it in the trash anyhow. Its whats inside that matters.
For that nick on the screw, it looks like a standard socket head cap screw, If the nick bothers you it is about $0.50 at the hardware store.
OK that's the easy parts.
with not knowing just how much of an impact the end of the shaft took, my first concern would be the bearings, It does not take a lot of impact to damage bearings. You get what I have always called Brinell marks, it is where the force presses the balls or rollers into the races and leaves very tiny dents. In time these tiny dents will become big dents and a very rough bearing. The only way to inspect is to take the bearing out, clean all of the grease out of it and look at the races with a magnifying glass for shiny spots spaced the same as the balls or rollers, if it is really bad you can feel the dents as you rotate the bearing in your fingers while applying an axial load.
In this case the shaft will never be turning at high RPM, (unless you have a really strong fast arm). this tool in the grand scheme of things gets very little actual use and the bearing are so over rated for the application it is ridiculous, The bearings were chosen for their physical size and not for their load carrying ability or RPM handling ability. This is a common engineering compromise.
Unless the casting broke the gears should be fine.
From what I can see in the pics, it does not look like the shaft took a real hard hit, the damage to the head of that screw is not much, so I would be real surprised at any casting damage. Worst case (while still unlikely) would be to the bearings on that shaft. If the bearings look and feel good grease them back up, put it back together, and be confident that what they shipped is what you got.
While you have it apart you can clean it all out, Many clone machines are known to have a lot of swarf from manufacturing still floating around inside and the grease used is of questionable quality.