First eyeball the center of the mill spindle over the center of the rotary table. Then take a small mag base and place it on the rotary table with the arm extended to the spindle of your mill, place a test indicator in the arm of the mag base and bring it in contact with the spindle.
Now crank the rotary table around the spindle moving your mill table till the reading is even all around, now for more accuracy use the indicator on a cutter shank in the collet. Easy and better than the hole, I have seen the hole on some rotary tables out by more than a thousandth.