Hey Alex,
Having to drill holes that have no provision for adjustment can be a bit nerve wracking.
Here is how I did it. First of all take your time, no need to rush.
1. Install the scale to the table first. This way its held in place. I mounted the bottom of the scale body flush with the bottom edge of the table.
2. I then trammed my scale in to within .003" over its travel. Its beneficial to do this first so that when you drill the holes into the saddle there is little to nothing to adjust after.
3. Center up the read head on the back of the saddle.
4. Find a drill bit that fits snug into the holes of the reader and use it to center mark your first hole. Be sure that the spacer for the read head in installed so the head is gapped properly to the scale.
5. Move your read head out of the way and carefully center punch your marked hole.
6. Center drill your hole.
7. Drill and Tap for M4.
8. Move your read head back into position and bolt down the side that you just drilled and tapped on the saddle.
9. Mark your second hole.
10. Move your read head out of the way and punch, spot, drill and tap the second hole as you did the first.
I did it that exact way and it came out perfect. It helps if you use a stub (screw machine length) drill instead of a jobber. The shorter drills are easier to control especially in a tight place.
Regards
Chevy