Yes, going through beginners hades. Everything that could mess me up is happening. At this point, I'm stuck on level calibration. Seem to be getting nowhere. The document you attached assumes that the surface plate is flat and level, or at least level to the measurement range of the level. At the moment, I can't guarantee that, not with 0.02 mm/M. That would require the slab be level to within 9 divisions * 0.02 mm/M, or 0.002" over 1ft. The counter is level to a mm over a meter, I'd guess.
Have a small 9 x 12 surface plate, and a 6" level. Right now the surface plate is sitting on the kitchen counter, because it's a bit warmer than down in the basement. I know about letting things settle thermally and mechanically. The counter isn't particularly stable, but 71F in the kitchen is a lot nicer for me than 61F in the basement on a similarly unstable surface. I use the cross level to indicate roughly where the level plane might be, then rotate the level 90 degrees to search for a candidate area.
What confuses the daylights out of me is the following situation. Say we pick 0 degree rotation and it reads high on the left side. Right side of bubble is on left side. Then rotate the level by 180 degrees. Now the bubble is high on the right side. Does one adjust the bubble towards the center? It doesn't seem to help the way I'd expect.