Yes, having the compound at a (much)wrong angle will do that when feeding with it. The thread tops essentially become very skinny. Interestingly, it is possible to make a thread like this "work", but it will be very weak and easy to strip.
On the subject of deburring I saw many people use brillo-like abrasive pads. Those never worked for me on a freshly cut thread. I recommend to buy a tiny 60 degree triangular needle file (spend money on it, don't buy cheap Chinese needle files, a file like this will last a lifetime used for deburring threads). Then I run the lathe for the thread to go away from the chuck slowly-no more than 60rpm (so run it reverse on normal thread) and holding the file in your hand put it in the thread so it rides all the way to the end. Repeat few times, then finish with brillo.
Also, when using a file manually, please remove your gloves, jewelery, and raise the cuffs of your sleeves up to your elbows. Many an accident happened with the lathe running slow enough the operator thought its not dangerous. It is. My shop is unheated, so I have to wear long sleeves and a winter coat, but when I put a file to a thread I take it off for those few minutes.