It's very common for the springs to touch the bore and should not cause any problems.
Those long springs,when compressed, want to try moving around and I know of no way to avoid that.
Don't think anyone has found a way to avoid it.
Is the bore rough with burs sticking out?
I've seen some really rough bores on some old military rifles but as long as no burrs protrude they are fine.
Is there some noticeable problem that makes you feel the bolt is at fault or are you just trying to speed lock time?