This is how I organized my 52 box;
Top till: things too big for drawers, 12" vernier caliper, inside mike set, vee blocks, telescoping gage set, dial indicator in box.
top right drawer: thread gages and sharpening gages.
second left drawer: center punches and scribers and similar tools.
third left drawer: pin vise set, adjustable parallel set, radius gages, special mikes.
top right drawer: calipers and dividers
second right drawer: scales and rules up to 6" and similar items, set of wire gage drills.
third right drawer: 1-2-3 blocks, screw jacks, small vee blocks.
upper long drawer, most of my mikes, outside up to 6", depth mikes, and standards; all are separated by 1/4" hard felt, carved out to fit each tool.
second long drawer: Scales longer than 6" and straightedges, combination square set, and another set of telescoping gages.
third long (bottom drawer): trammel set, 12" vernier gear caliper, taper parallel set, parallel clamps and a LOT of other misc. stuff.
Center drawer: Machinery's Handbook, ed. early 1960s.
Please note that I do not keep any cutting tools in my box, other than a set of wire gage drills #60-80 in my box; I like to keep the felt lining fairly clean, not oil soaked; keep cutting tools elsewhere!
I keep most of my dial indicator stuff in a card file drawer that is handy to the shop, I keep my Gerstner box, which cost me $76 back in the day, inside a separate office room, along with all the other measuring tools that do not fit in the 52, most of which are in their own wood boxes. This arrangement keeps rust at bay during the winter/ spring; I do keep other mikes at hand and often used tools close at hand, mostly in a cabinet that I made for use in front of the lathe, it has one large drawer for small tools and shelves for accessories below and a rack for Aloris tooling behind it.
I may put up some pictures if any of 'yalls want to see them.