What are the brackets like? When I used to fit scales and heads on machines (several times a week, but still to do it on my own!), I used to make up new brackets every time as the supplied ones were a) pretty bulky and b) multiple parts bolted together and c) looked naff.
If the scales aren't absolutely parallel with the ways, the reader head will drag and the friction will try to move them or the reader out of alignment, leading to backlash and in the worst cases, broken scales and readers...
To mount the scales I'd use a couple pieces of sturdy (e.g. 10mm) plate, tapped for the scale's fixing bolts, with counterbored holes for its fixings to the lathe/mill and threaded holes for dog-point grubscrews at the corners to a) adjust the plates parallel to the ways and b) pierce the quarter-inch of loose filler and paint found on far-eastern machinery.
When setting up, before attaching the reader head put a DTI on the carriage / table and sweep the length of the scale both vertically and horizontally aiming for (ideally) no deviation end-to-end, maximum of a few thou" - the corner grubscrews make this pretty easy to do, along with the slotted ends of the scales
For the readers, again there's no substitute for sturdy mountings, and parallelism's just as important! Leave the transit spacers in place while adjusting, and adjust the bracket to the reader, not t'other way around!
Dave H. (the other one)