Atlas lathe should have been built to better standards than the typical Asian lathe. I am not familiar with that particular model number. My 6" Atlas/Craftsman is an older model with a cast iron headstock but it would pemit shimming both the headstock and tailstock bearings to bring into better alignmnent with the halfnuts
Don't see any reason why this model wouldn't be able to be shimmed but I'm curious as to why it's occurring in the first place, Doesn't seem to be a problem that I can find using search that's common to the Atlas 6" lathes. The 0.005in. shim at the tailstock lead screw bearing dropped the lead screw flex to zero at that end. It also dropped the measurement at the mid-point by 0.005in., though it only reduced the flex at the headstock end by 0.001in. More testing will be done to make sure it's not a bent lead screw I'm dealing with.