download a prototrak retrofit manual, it tells you how to properly set the gibs on a cnc machine. I will explain
table all the way to the right, place an indicator on the knee way, mag base, put the tip on the table, on the left, make sure the holder is rigid, now push on the right side of the table, and adjust the gib until about .001 is all that is recored, do the same with the saddle gib, placing the mag base on the saddle this time and the tip on the knee way, I know you don't have a knee but i guess its the base on yours. that's how i set my mill up. if your machine is worn then you must set it up with the table in the middle of the travel.
another source of lost motion is the ball nut mounts, on knee mills this would be the yoke. mine flexes