Up until about 18 months ago I had no CNC lathe experience either so like you I had a pretty steep learning curve. But I had a few years CNC mill experience and about 50 years of general machining experience so I at least kinda knew what to expect from the machine and how to get there. I'll try to get you started.
So one thing I learned early on was to set the X zero for all of the tools to the spindle center line, that way it's the same for every part. Z zero can be set to the chuck face or maybe to the chuck jaw face. Then work in the +X and +Z quadrant. Material stick out from the jaws is always in the + direction for Z axis, as is the stock diameter (radius) + in the X axis. So rather than subtracting values for the tool offsets, you would be adding the values.
A brief read through of the manual indicates to me that it is really geared to manual code generation, but it looks like the Wizard functions allow multiple step downs. But it appears to be rather clunky. The good news is that they have a post processor for Fusion 360
https://www.microkinetics.com/index.php?page=post_processors
I would recommend starting here
https://academy.titansofcnc.com/ This is a free online course that will take you from zero to making parts in a couple of days. You can also download Fusion 360 from their Resources tab, it's still free to hobbyists. This is what I did and it really helped. I still have problems drawing in Fusion 360, so many times what I do is make my drawing in 2D AutoCad then import the dwg or dxf file into Fusion 360, create the solid model from that, then do the CAM work in Fusion 360. You can pretty much make Fusion 360 do anything you want as far as tool paths go.
I'll spend a little more time with the manual to see if I can get a better understanding of your system.
I hope this gets you pointed in the right direction. I'm retired and pretty much around all the time when you have questions.